- s -

• sendToWorkers() : MSTClusterMaker , PMSTClusterMaker
• serialize() : MSTNode , MST
• set_global_args() : arg_parser
• setCustomData() : EST
• setHeuristicChain() : ESTAnalyzer
• setHint() : HeuristicChain
• setProcessed() : EST
• setReferenceEST() : Heuristic , HeuristicChain , MatrixFileAnalyzer , NewUVHeuristic , TVHeuristic , TwoPassD2 , CLU , UVSampleHeuristic , D2 , D2Zim , ESTAnalyzer , FWAnalyzer
• setRevCompTable() : ESTCodec
• setSimilarity() : EST
• setupChain() : FilterChain , HeuristicChain
• setupParameters() : ParameterSetManager
• shouldAnalyze() : Heuristic , HeuristicChain
• showArguments() : FMWSCA , MatrixFileAnalyzer , UVSampleHeuristic , LCFilter , TVHeuristic , MSTClusterMaker , D2 , CLU , ClusterMaker , PMSTClusterMaker , TwoPassD2 , Filter , FWAnalyzer , HeuristicChain , Heuristic , D2Zim , NewUVHeuristic , ESTAnalyzer , LengthFilter , FilterChain
• startTable() : ResultLog