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• ParameterSet() : ParameterSet
• ParameterSetManager() : ParameterSetManager
• parseArguments() : ClusterMaker , Filter , MatrixFileAnalyzer , MSTClusterMaker , FilterChain , NewUVHeuristic , PMSTClusterMaker , D2 , FMWSCA , TVHeuristic , TwoPassD2 , FWAnalyzer , UVSampleHeuristic , CLU , D2Zim , Heuristic , HeuristicChain , ESTAnalyzer , LCFilter , LengthFilter
• parseESTCount() : MatrixFileAnalyzer
• parseMetrics() : MatrixFileAnalyzer
• PartitionData() : PartitionData
• PMSTClusterMaker() : PMSTClusterMaker
• PMSTHeapCache() : PMSTHeapCache
• popBestEntry() : PMSTHeapCache
• popCache() : MSTHeapCache
• populateCache() : MSTClusterMaker , PMSTClusterMaker , TransMSTClusterMaker
• populateMST() : MSTClusterMaker
• preprocess() : MSTMultiListCache , MSTCache
• print() : InteractiveConsole
• printClusterTree() : MSTCluster
• printStats() : Heuristic , FilterChain , Filter , InteractiveConsole , HeuristicChain , TVHeuristic
• processCommands() : InteractiveConsole
• processFilterData() : Filter
• processMetricList() : TransMSTClusterMaker
• pruneCache() : MSTMultiListCache
• pruneCaches() : MSTMultiListCache , MSTHeapCache , MSTCache
• pruneMetricEntries() : TransMSTClusterMaker