- a -

• add() : MSTCluster
• addDummyCluster() : ClusterMaker , MSTClusterMaker
• addDummyEntry() : LCFilter
• addEntries() : TransCacheEntry
• addEST() : ClusterMaker , MSTClusterMaker
• addFilter() : FilterChain
• addFilterData() : Filter
• addHeuristic() : HeuristicChain
• addMoreChildESTs() : MSTClusterMaker , PMSTClusterMaker
• addNode() : MST
• addParameterSet() : ParameterSetManager
• addRevCompTable() : ESTCodec
• allToAllBroadcast() : FilterChain
• analyze() : D2 , TwoPassD2 , ESTAnalyzer , PMSTClusterMaker , TransMSTClusterMaker , MSTClusterMaker , D2Zim , ESTAnalyzer , MatrixFileAnalyzer , InteractiveConsole , FWAnalyzer
• analyzeFrame() : FWAnalyzer
• applyFilter() : Filter
• applyFilters() : FilterChain
• arg_parser() : arg_parser