Here is a list of all class members with links to the classes they belong to:

- a -

• abundanceFraction : CLU
• add() : MSTCluster
• ADD_EST : MSTClusterMaker , PMSTClusterMaker
• addDummyCluster() : MSTClusterMaker , ClusterMaker
• addDummyEntry() : LCFilter
• addEntries() : TransCacheEntry
• addEST() : ClusterMaker , MSTClusterMaker
• addFilter() : FilterChain
• addFilterData() : Filter
• addHeuristic() : HeuristicChain
• addMoreChildESTs() : MSTClusterMaker , PMSTClusterMaker
• addNode() : MST
• addParameterSet() : ParameterSetManager
• addRevCompTable() : ESTCodec
• alignmentData : CachedESTInfo
• alignmentMetric : D2 , D2Zim , MSTNode , TwoPassD2
• allToAllBroadcast() : FilterChain
• analysisCount : MSTMultiListCache
• analyze() : FWAnalyzer , InteractiveConsole , MatrixFileAnalyzer , MSTClusterMaker , PMSTClusterMaker , TransMSTClusterMaker , TwoPassD2 , D2 , D2Zim , ESTAnalyzer
• analyzeCount : TransMSTClusterMaker
• analyzeFrame() : FWAnalyzer
• analyzer : ClusterMaker , InteractiveConsole , MSTCache
• analyzerName : ESTAnalyzer
• applyFilter() : Filter
• applyFilters() : FilterChain
• arg_help : arg_parser::arg_record
• arg_parser() : arg_parser
• arg_text : arg_parser::arg_record
• arg_type : arg_parser
• argsList : D2 , LengthFilter , TVHeuristic , D2Zim , TwoPassD2 , PMSTClusterMaker , MSTClusterMaker , LCFilter , NewUVHeuristic , MatrixFileAnalyzer , FMWSCA , UVSampleHeuristic , CLU
• argumentFrameSize : FWAnalyzer
• array_of_arg_records : arg_parser