Uses of Class
org.peace_tools.workspace.MSTClusterData

Packages that use MSTClusterData

org.peace_tools.core	Contains the core classes that coordinate the activities of various classes and wizards.
org.peace_tools.core.job	Contains the classes associated with the job wizard.
org.peace_tools.data	Contains the classes that provide data for the various views in the GUI.
org.peace_tools.views	Contains the classes that provide views for the various data objects in the GUI.
org.peace_tools.workspace	Contains the classes that provide persistent storage of work space configuration.

Uses of MSTClusterData in org.peace_tools.core

Methods in org.peace_tools.core with parameters of type MSTClusterData

void	ViewFactory.createOverlapView(MSTClusterData cluster) Method to create a overlap view for a given entry.
void	ViewFactory.createSummaryView(MSTClusterData cluster) Method to create a graph type of view for a given entry.

Uses of MSTClusterData in org.peace_tools.core.job

Fields in org.peace_tools.core.job declared as MSTClusterData

private MSTClusterData

JobWizard.clusterData The cluster entry that is finally created by this job wizard when the final wizard page is displayed.

Methods in org.peace_tools.core.job that return MSTClusterData

protected MSTClusterData	JobWizard.getClusterData() Obtain the cluster entry created and added by this wizard.
protected MSTClusterData	ClusterWizardPage.getClusterEntry(java.lang.String id, java.lang.String mstID, JobSummary summary) Helper method to create a MSTCluster data.

Uses of MSTClusterData in org.peace_tools.data

Fields in org.peace_tools.data declared as MSTClusterData

private MSTClusterData	ClusterTreeTableModel.wsEntry A handy reference to the workspace entry from which the data for this cluster table model was actually obtained.
private MSTClusterData	OverlapModel.wsEntry A handy reference to the workspace entry from which the data for this overlap model was partially obtained.

Methods in org.peace_tools.data that return MSTClusterData

MSTClusterData	ClusterTreeTableModel.getWsEntry() Obtain the actual workspace entry whose data is contained in this model.
MSTClusterData	OverlapModel.getWsEntry() Obtain the actual workspace entry whose data is contained in this model.

Methods in org.peace_tools.data with parameters of type MSTClusterData

static OverlapModel

OverlapModel.create(ClusterFile clusters, ESTList ests, MST mst, MSTClusterData wsEntry) The constructor.

Constructors in org.peace_tools.data with parameters of type MSTClusterData

ClusterTreeTableModel(ClusterFile clusters, ESTList ests, MSTClusterData wsEntry)
The constructor.

OverlapModel(ClusterFile clusters, ESTList ests, MSTClusterData wsEntry)
The constructor.

Uses of MSTClusterData in org.peace_tools.views

Methods in org.peace_tools.views with parameters of type MSTClusterData

static javax.swing.JTree	PropertiesTreeMaker.makeProperties(MSTClusterData cluster, java.awt.Component parent) Build a property tree with cluster file as the main entry.
private static javax.swing.tree.MutableTreeNode	PropertiesTreeMaker.makeSummaryProperties(MSTClusterData cluster, java.awt.Component parent) Helper method to create a summary node for a given clustering.

Constructors in org.peace_tools.views with parameters of type MSTClusterData

ClusterSummaryView(MainFrame frame, ClusterFile clusterFile, ESTList estList, MSTClusterData wsEntry)
The default constructor.

Uses of MSTClusterData in org.peace_tools.workspace

Fields in org.peace_tools.workspace with type parameters of type MSTClusterData

private java.util.ArrayList<MSTClusterData>

DataSet.clusterList The optional list of clustering data files that are currently associated with this data set.

Methods in org.peace_tools.workspace that return MSTClusterData

static MSTClusterData	MSTClusterData.create(org.w3c.dom.Element clstrData) Helper method to utilize data from a DOM tree to create a suitable MSTClusterData entry.
MSTClusterData	Workspace.getClusterData(java.lang.String jobID) Obtain the MSTClusterData entry for a given job ID.
MSTClusterData	DataSet.getClusterData(java.lang.String jobID) Obtain the MSTClusterData entry for a given job ID.

Methods in org.peace_tools.workspace that return types with arguments of type MSTClusterData

java.util.ArrayList<MSTClusterData>

DataSet.getClusterList() Obtain the list of clustering data files encapsulated by this data set.

Methods in org.peace_tools.workspace with parameters of type MSTClusterData

void	DataSet.add(MSTClusterData cluster) Add a new MST-based clustering data file to this data set.
void	DataSet.remove(MSTClusterData cluster) Remove an existing MST-based clustering data file from this data set.

Constructors in org.peace_tools.workspace with parameters of type MSTClusterData

WorkspaceEvent(MSTClusterData clusters, WorkspaceEvent.Operation operation)
Constructor to create an event that can be used to report change in the status of a MST cluster data file.