Uses of Class
org.peace_tools.data.ClusterFile

Packages that use ClusterFile

org.peace_tools.data	Contains the classes that provide data for the various views in the GUI.
org.peace_tools.views	Contains the classes that provide views for the various data objects in the GUI.
org.peace_tools.views.overlap	Contains the classes that provide a custom overlap view of clusters.

Uses of ClusterFile in org.peace_tools.data

Fields in org.peace_tools.data declared as ClusterFile

private ClusterFile	ClusterTreeTableModel.clusterFile Reference to the cluster file that contains the cluster data to be adapted and interfaced by this model.
private ClusterFile	OverlapModel.clusterFile Reference to the cluster file that contains the cluster information that was used to generate this pre-alignment model.

Methods in org.peace_tools.data that return ClusterFile

ClusterFile	DataStore.getClusterData(java.lang.String fileName, java.awt.Component parent) Method to load/get a given cluster file.
ClusterFile	ClusterTreeTableModel.getClusterFile() Obtain the cluster file from where cluster data was obtained.
ClusterFile	OverlapModel.getClusterFile() Obtain the cluster file information from where this pre-alignment model was built.
static ClusterFile	ClusterFile.loadCluster(java.io.File clusterFile) This method loads cluster data into an in-memory format.
static ClusterFile	ClusterFile.loadCluster(java.lang.String fileName, java.io.InputStream is) This method loads cluster data into an in-memory format.

Methods in org.peace_tools.data with parameters of type ClusterFile

private void	OverlapModel.buildClusterList(ClusterFile clusterFile) Helper method to populate local list of clusters from a cluster file.
static OverlapModel	OverlapModel.create(ClusterFile clusters, ESTList ests, MST mst, MSTClusterData wsEntry) The constructor.

Constructors in org.peace_tools.data with parameters of type ClusterFile

ClusterTreeTableModel(ClusterFile clusters, ESTList ests, MSTClusterData wsEntry)
The constructor.

OverlapModel(ClusterFile clusters, ESTList ests, MSTClusterData wsEntry)
The constructor.

Uses of ClusterFile in org.peace_tools.views

Fields in org.peace_tools.views declared as ClusterFile

private ClusterFile

ClusterSummaryView.clusterFile The set of clusters that we are working with.

Constructors in org.peace_tools.views with parameters of type ClusterFile

ClusterSummaryView(MainFrame frame, ClusterFile clusterFile, ESTList estList, MSTClusterData wsEntry)
The default constructor.

Uses of ClusterFile in org.peace_tools.views.overlap

Constructors in org.peace_tools.views.overlap with parameters of type ClusterFile

OverlapView(MainFrame frame, OverlapModel pam, ClusterFile clusterFile)
The default constructor.