PEACE: Parallel Environment for Assembly and Clustering of gene Expressions.
Class List
arg_parser
arg_parser::arg_record
CachedESTInfo
CLU
CLU::CLUESTData
ClusterMaker
ClusterMakerFactory
CmdEntry
D2
D2Zim
InteractiveConsole::Entry
EqualInteger
EqualStr
EST
ESTAnalyzer
ESTAnalyzerFactory
ESTCodec
ESTCustomData
Filter
FilterChain
FilterFactory
FMWSCA
FWAnalyzer
GreaterCachedESTInfo
Heuristic
HeuristicChain
HeuristicFactory
InteractiveConsole
LCFilter
LengthFilter
LessCachedESTInfo
EST::LessEST
MatrixFileAnalyzer
MPIStats
MST
MSTCache
MSTCluster
MSTClusterMaker
MSTHeapCache
MSTMultiListCache
MSTNode
NewUVHeuristic
ESTCodec::NormalEncoder< Shift, Mask >
ParameterSet
ParameterSetManager
PartitionData
PMSTClusterMaker
PMSTHeapCache
ResultLog
ESTCodec::RevCompEncoder< Shift, Mask >
TransCacheEntry
TransMSTClusterMaker
TVHeuristic
TwoPassD2
UVSampleHeuristic
Class Hierarchy
Class Members
Graphical Class Hierarchy
File List
arg_parser.cpp
arg_parser.h
CachedESTInfo.h
CachedESTInfoHelper.h
CLU.cpp
CLU.h
ClusterMaker.cpp
ClusterMaker.h
ClusterMakerFactory.cpp
ClusterMakerFactory.h
config.h
D2.cpp
D2.h
D2Zim.cpp
D2Zim.h
EST.cpp
EST.h
ESTAnalyzer.cpp
ESTAnalyzer.h
ESTAnalyzerFactory.cpp
ESTAnalyzerFactory.h
ESTCodec.cpp
ESTCodec.h
ESTCustomData.h
Filter.cpp
Filter.h
FilterChain.cpp
FilterChain.h
FilterFactory.cpp
FilterFactory.h
FMWSCA.cpp
FMWSCA.h
FWAnalyzer.cpp
FWAnalyzer.h
HashMap.h
Heuristic.cpp
Heuristic.h
HeuristicChain.cpp
HeuristicChain.h
HeuristicFactory.cpp
HeuristicFactory.h
HTMLHeader.h
InteractiveConsole.cpp
InteractiveConsole.h
LCFilter.cpp
LCFilter.h
LengthFilter.cpp
LengthFilter.h
main.cpp
MatrixFileAnalyzer.cpp
MatrixFileAnalyzer.h
MPIHelper.cpp
MPIHelper.h
MPIStats.cpp
MPIStats.h
MST.cpp
MST.h
MSTCache.cpp
MSTCache.h
MSTCluster.cpp
MSTCluster.h
MSTClusterMaker.cpp
MSTClusterMaker.h
MSTHeapCache.cpp
MSTHeapCache.h
MSTMultiListCache.cpp
MSTMultiListCache.h
MSTNode.cpp
MSTNode.h
NewUVHeuristic.cpp
NewUVHeuristic.h
ParameterSet.h
ParameterSetManager.cpp
ParameterSetManager.h
PartitionData.h
PMSTClusterMaker.cpp
PMSTClusterMaker.h
PMSTHeapCache.cpp
PMSTHeapCache.h
ResultLog.cpp
ResultLog.h
TransCacheEntry.cpp
TransCacheEntry.h
TransMSTClusterMaker.cpp
TransMSTClusterMaker.h
TVHeuristic.cpp
TVHeuristic.h
TwoPassD2.cpp
TwoPassD2.h
Utilities.cpp
Utilities.h
UVSampleHeuristic.cpp
UVSampleHeuristic.h
File Members
